SpletGene expression was normalized in the STEM software and genes with maximal values minus minimal values not <1 were included in the analysis. The 7581 genes from 0, 1, and … Splet28. jun. 2024 · Based on the short-time sequence expression software and RNA-seq data, the PeLBD gene expression was analyzed. We also investigated the functional annotation …

Frontiers Comprehensive Analysis of circRNA Expression Profiles …

Splet24. jun. 2011 · Significantly co-expressed genes in S. aureus and E. coli inoculated SCS-BTA18-Q and SCS-BTA18-q cells identified using the clustering algorithm implemented in the short time-series expression miner STEM [28,29] (version 1.3.6). Only genes with a fold change of log 2 fc ≥ 0.75 in time-course were considered. Significance was assessed … SpletThe first method, STEM (Short Time-series Expression Miner), is a clustering algorithm and software specifically designed for short time series expression experiments, which … tina vorname

Analysis of dynamic molecular networks for pancreatic ductal ...

SpletSTEM is a Java program for clustering, comparing, and visualizing short time series gene expression data (eight time points or less). STEM allows researchers to identify significant temporal expression profiles and the genes associated with these profiles and to compare the behavior of these genes across multiple conditions. Splet12. apr. 2024 · To explore gene expression changes in different growth stages of WH pigs, STEM (Short Time-series Expression Miner) software was used to cluster the expression levels of DEGs with similar expression patterns, and their expression patterns were analyzed. In this study, the method assumed that the logarithmic ratio of expression … Splet12. apr. 2024 · STEM (Short Time-series Expression Miner) analysis indicated significant variations in the mRNA expression across distinct muscle development stages. The … tina vrbnjak wiki